Next generation sequencing has speed up genome analysis and brought omics research closer to many organisms and biological scenarios. Today an increasing number of research projects propose the combined use of different omics platforms to investigate diverse aspects of genome functioning. These proposals ideally seek to provide complementary sources of molecular information that eventually can be put together to obtain systems biology models of biological processes. Hence, it is not rare anymore to find experimental designs involving the collection of genome, transcriptome, epigenome and even metabolome data on a particular system. STATegra targets several sequencing based functional genomics methods, proteomics and metabolomics. These methods, together with software implementations, will be presented. I graduated at the Polytechincal University of Valencia Spain in with a degree in Agronomy and obtained my PhD at the University of Leiden in the Netherlands in in the area of molecular microbiology. From August I combine this affiliation with a position as full-professor at the Department of Microbiology and Cell Science of the University of Florida in Gainesville. My research focuses on the understanding of the functional aspects of gene expression at the genome-wide level and across different organisms.
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Mobile devices, such as smartphones and tablets, are ubiquitous in our everyday life. Other application areas of image systems, requiring highest computing capabilities while having stringent resource and power budgets as well as hard real-time constraints, are systems characterized by close-to-sensor processing, such as advanced driver assistance systems, mobile scanners, and smart devices used in medical and industrial imaging.
To scale computing performance in the future, the energy efficiency of images systems has to be significantly improved. This is why systems will be comprised more and more of heterogeneous hardware with specialized and different processor cores based on accelerators e. Furthermore, new 3D integrated circuit technologies are an emerging trend and allow for a higher integration of compute cores, memory and sensors to reduce communication latency, improve bandwidth leading to lower energy consumption.
However, design and test, as well as parallel programming of such Heterogeneous Image Systems HIS are challenging tasks. On the one hand, methodologies for designing novel hardware technologies and customizable architecture platforms are required. On the other hand, design methods are needed, which concentrate on algorithm development rather than on low level implementation details.
Consequently, non-software engineering experts are shielded from the difficulty of parallel heterogeneous programming.
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